2026
- Nonreciprocal buckling makes active filaments polyfunctional – PNAS, Mar 2026, Sami Al-Izzi, Richard Morris
- Parameter-wise predictions and sensitivity analysis for random walk models in the life sciences – Journal of Theoretical Biology, Mar 2026, Yihan Liu, David Warne, Matthew Simpson
- Novel commensal rhizobacteria isolated from field-grown canola plants – Biocatalysis and Agricultural biotechnology, Feb 2026, Aysha Sezmis, Mike McDonald
- Semi-supervised deep matrix factorization model for clustering multi-omics data – Computer Methods & Programs in Biomedicine, Jan 2026, Richi Nayak
- Continuum models describing probabilistic motion of tagged agents in exclusion processes – Physical Review E, Jan 2026, Matthew Simpson
2025
- A Cautionary Tale of Model Misspecification and Identifiability – Bulletin of Mathematical Biology, Dec 2025, Alexander Browning, Jennifer Flegg
- A Unified Framework for Variable Selection in Model-Based Clustering with Missing Not at Random – Refereed Conference Proceeding, NeurIPS 2025, Dec 2025, TrungTin Nguyen, Chris Drovandi
- Mitochondrial function regulates cell growth kinetics to maintain mitochondrial homeostasis – Current Biology, Nov 2025, Richard Morris
- Studying organisational closure in biological systems with process-enablement graphs – BioSystems, Nov 2025, Sean Vittadello
- Inference and prediction for stochastic models of biological populations undergoing migration and proliferation – Royal Society Interface, Oct 2025, Matthew Simpson
- A mathematical model of metacarpal subchondral bone adaptation, microdamage and repair in racehorses – Royal Society Interface, Oct 2025, Michael Pan, Jennifer Flegg
- Evolution of one species increases resistance to invasion in a simple synthetic community – Microbial Ecology, Oct 2025, Mike McDonald
- A novel modality contribution confidence-enhanced multimodal deep learning framework for multiomics data – BMC Bioinformatics, Oct 2025, MD Abul Bashar, Richi Nayak
- Proline-Adjacent Phosphosites on Saccharomyces cerevisiae Histone Demethylase Rph1p are Salt Stress Responsive and Important for Cell Growth Under Salt Stress – Molecular & Cellular Proteomics, Oct 2025, Nicola Karakatsanis, Joshua Hamey, Marc Wilkins
- Towards a mathematical framework for modelling cell fate dynamics – Journal of Mathematical Biology, Sep 2025, Sean Vittadello
- Accurate stochastic simulation algorithm for multiscale models of infectious diseases – Journal of Theoretical Biology, Sep 2025, Jennifer Flegg
- Data-informed model reduction for inference and prediction from non-identifiable models – Journal of Theoretical Biology, Aug 2025, Matthew Simpson
- Unraveling the tempo and mode of horizontal gene transfer in bacteria – Trends in Microbiology, Aug 2025, Mike McDonald
- Left ventricular myocardial molecular profile of human diabetic ischaemic cardiomyopathy – EMBO Molecular Medicine, Aug 2025, Michael Pan, Vijay Rajagopal
- The topological properties of the protein universe – Nature Communications, Aug 2025, Lucy Ham
- Geometric frustration in twist-bend nematic droplets – Soft Matter, Aug 2025, Richard Morris
- Capturing nematic order on tissue surfaces of arbitrary geometry – Nature Communications, Aug 2025, Richard Morris
- Nonchromatin regulatory functions of the histone variant H2A.B in SWI/SNF genomic deposition – Science Advances, Jul 2025, Jiayu (Jean) Wen
- Drosophila hamlet mediates epithelial tissue assembly of the reproductive system – eLife, Jul 2025, Jiayu (Jean) Wen
- PRDM16 functions as a co-repressor in the BMP pathway to suppress neural stem cell proliferation – eLife, Jul 2025, Jiayu (Jean) Wen
- Stochastically bistable growth and decay in Togashi-Kaneko Model – Physical Review E, Jul 2025, Richard Morris
- Morse Theory and Meron-Mediated Interactions Between Disclination Lines in Nematic Materials – Physical Review X, Jun 2025, Richard Morris
- Nonstationary critical phenomena: Expanding the critical point – Physical Review E, Jun 2025, Richard Morris
- Mapping, modelling, and reprogramming cell-fate decision-making systems – Annual Review of Biomedical Data Science, May 2025, Lucy Ham
- Energy-based analysis of biochemical oscillators using bond graphs and linear control theory – Royal Society Open Science, Apr 2025, Michael Pan
- Lattice-based stochastic models motivate non-linear diffusion descriptions of memory-based dispersal – Journal of Mathematical Biology, Apr 2025, Matthew Simpson
- Inferring gene regulatory networks by hypergraph generative model – Cell Reports Methods, Apr 2025, Marc Wilkins, Wenjie Zhang, Hanchen Wang, Guangxin Su
- SMYD5 is a ribosomal methyltransferase that trimethylates RPL40 lysine 22 through recognition of a KXY motif – Cell Reports, Apr 2025, Joshua Hamey, Marc Wilkins
- Spatial transcriptomics reveals regionally altered gene expression that drives retinal degeneration – Communications Biology, Apr 2025, Jiayu (Jean) Wen
- Semi-Supervised Learning Under General Causal Models – IEEE Explore, Apr 2025, Heejung Shim
- Gauge freedom and objective rates in fluid deformable surfaces – Journal of Fluid Mechanics, Mar 2025, Sami Al-Izzi, Richard Morris
- From shallow to deep: The evolution of machine learning and mechanistic model integration in cancer research – Current Opinions in Systems Biology, Mar 2025, Lan Nguyen
- ATP-controlled remodeling in reconstituted actomyosin – Physical Review Research, Feb 2025, Sami Al-Izzi, Richard Morris
- Advecting scaffolds: Controlling the remodeling of actomyosin with anillin – Physical Review E, Feb 2025, Sami Al-Izzi, Richard Morris
- Spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis – Nature Genetics, Feb 2025, Heejung Shim
- Defect dynamics in cholesterics: beyond the Peach–Koehler force – Soft Matter, Feb 2025, Richard Morris
- Co-Existence Slows Diversification in Experimental Populations of E. coli and P. Flourescens – Environmental Microbiology, Feb 2025, Aysha Sezmis, Mike McDonald
- A paradoxical population structure of var DBLα types in Africa – PLOS Pathogens, Feb 2025, Heejung Shim
- Activation of CAMK2 by pseudokinase PEAK1 represents a targetable pathway in triple negative breast cancer – Nature Communications, Feb 2025, Lan Nguyen
- Energy-based modelling of single actin filament polymerization using bond graphs – Royal Society Interface, Jan 2025, Michael Pan, Vijay Rajagopal
- Random walk models in the life sciences: including births, deaths and local interactions – Royal Society Interface, Jan 2025, Matthew Simpson, Ruth Baker
- A Dean–Kawasaki equation for reaction diffusion systems driven by Poisson noise – Journal of Physics A: Mathematical and Theoretical, Jan 2025, Richard Morris
- Integrative modeling uncovers p21-driven drug resistance and prioritizes therapies for PIK3CA-mutant breast cancer –NPJ Precision Oncology, Jan 2025, Lan Nguyen
2024
- Ethical bioprospecting and microbial assessments for sustainable solutions to the AMR crisis – IUBMB Life, Dec 2024, Mike McDonald, Trevor Lithgow
- Inflammasome protein scaffolds the DNA damage complex during tumor development – Nature Immunology, Oct 2024, Jiayu (Jean) Wen
- Integrative Modeling of Signaling Network Dynamics Identifies Cell Type–Selective Therapeutic Strategies for FGFR4-Driven Cancers – Cancer Research, Oct 2024, Lan Nguyen
- SETD1B mutations confer apoptosis resistance and BCL2 independence in B cell lymphoma – Journal of Experimental Medicine, Sept 2024, Jiayu (Jean) Wen
- Multiscale Poisson process approaches for detecting and estimating differences from high-throughput sequencing assays – Annals of Applied Statistics, Sept 2024, Heejung Shim
- Stress pathway outputs are encoded by pH-dependent clustering of kinase components – Nature Communications, Aug 20245, Lan Nguyen
- Two wrongs do not make a right: the assumption that an inhibitor acts as an inverse activator – Journal of Mathematical Biology, July 2024, Robyn Araujo, Lan Nguyen
- A stochastic vs deterministic perspective on the timing of cellular events – Nature Communications, June 2024, Lucy Ham
- Integrative modeling and analysis of signaling crosstalk reveal molecular switches coordinating Yes-associated protein transcriptional activities – iScience, Mar 2024, Lan Nguyen
- Predicting circRNA-miRNA interactions utilizing transformer-based RNA sequential learning and high-order proximity preserved embedding – iScience, Jan 2024, Jiayu (Jean) Wen
2023
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Frontiers of Mathematical Biology: A workshop honouring Professor Edmund Crampin – Mathematical Biosciences, May 2023, Robyn Araujo, Jennifer Flegg, Hilary Hunt, James Osborne, Michael Pan, Vijay Rajagopal