QUT/Melbourne MACSYS Workshop
04/11/2025
|By Tim Macuga
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QUT/Melbourne MACSYS Workshop
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This is a two-day workshop at QUT’s Gardens Point Campus in Brisbane involving members of the QUT and Melbourne nodes.
- Venue: QUT Gardens Point Campus, Z-305 (& Z-306 for collaboration sessions)
- Code-of-Conduct
Schedule
Day 1 – Thursday, 20 November
10:00 am: Introduction to workshop – Jen Flegg & Mat Simpson
10:00 am: Session 1 Presentations – Chair: Kai Li
- Modelling mRNA poly(A) tail dynamics – Hilary Hunt
- Modelling wine-fermenting yeasts with ODEs: Can pairwise interactions predict the behaviour of a full community? – Alexander Johnston
- One of the many? Structural uncertainty in reaction network inference – Elijah Foo
- Inference for differential equation models without knowing their solutions – James Bennett
- Inference, identifiability, and model misspecification – Alexander Browning
- Discrete lattice-based random walk models for population dynamics – Adarshkrishnan Rajakumar
12:00 pm: Lunch
1:30 pm: Collaboration – with an emphasis on trying to work with people from different nodes
3:00 pm: Coffee break
3:30 pm: Collaboration
5:00 pm: Day 1 concludes
Day 2 – Friday, 21 November
9:30 am: Session 2 Presentations – Chair: Alexander Johnston
- Machine Learning-Enhanced Workflows for Whole-Cell Model Perturbation Experiments – Sophie Wharrie
- Mathematical modeling of growing biological tissue interfaces – Shahak Kuba
- New mathematical models of biological tissue mechanics – Yuuka Xiao Ying Foo
- Towards unifying mechanical models in biology – Kai Li
10:30 am: Coffee Break
11:00 am: Session 3 Presentations – Chair: James Bennett
- Bayesian Inference for GLUT4 translocation with Insulin – Chris Drovandi
- Bayesian Parameter Balancing Enables Robust and Consistent Estimation of Kinetic Parameter Uncertainty – TrungTin Nguyen
- Prediction-centric calibration for parameter inference of ODE models
- Multimodal Fusion for AI Virtual Cell
12:00 pm: Lunch Break
1:30 pm: Collaboration
3:00 pm: Workshop concludes
- Rooms are booked until 5 pm for any further collaboration if wanted